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Landmark or Region: Examples: sod-1, prd-6, ccg-4, chs-1, mfa-1, Ncra_OR74A_chrIII_contig7.1, Ncra_OR74A_chrI_contig7.2, Ncra_OR74A_chrI_contig7.3, Ncra_OR74A_chrVI_contig7.4, Ncra_OR74A_chrII_contig7.5, Ncra_OR74A_chrI_contig7.6, Ncra_OR74A_chrI_contig7.7, Ncra_OR74A_chrII_contig7.8, Ncra_OR74A_chrI_contig7.9, Ncra_OR74A_chrVII_contig7.10, Ncra_OR74A_chrV_contig7.11, Ncra_OR74A_chrVI_contig7.12, Ncra_OR74A_chrV_contig7.13, Ncra_OR74A_chrV_contig7.15, Ncra_OR74A_chrV_contig7.14, Ncra_OR74A_chrVI_contig7.16, Ncra_OR74A_chrIII_contig7.17, Ncra_OR74A_chrIV_contig7.18, Ncra_OR74A_chrIV_contig7.19, Ncra_OR74A_chrIV_contig7.20, Ncra_OR74A_chrVII_contig7.21, Ncra_OR74A_chrVI_contig7.22, Ncra_OR74A_chrVII_contig7.23, Ncra_OR74A_chrV_contig7.24, Ncra_OR74A_chrIII_contig7.25, Ncra_OR74A_chrIV_contig7.26, Ncra_OR74A_chrIII_contig7.27, Ncra_OR74A_chrIV_contig7.28, Ncra_OR74A_chrI_contig7.29, Ncra_OR74A_chrII_contig7.30, Ncra_OR74A_chrV_contig7.31, Ncra_OR74A_chrVII_contig7.32, Ncra_OR74A_chrII_contig7.33, Ncra_OR74A_chrVI_contig7.34, Ncra_OR74A_chrIV_contig7.35, Ncra_OR74A_chrIV_contig7.36, Ncra_OR74A_chrV_contig7.37, Ncra_OR74A_chrI_contig7.38, Ncra_OR74A_chrI_contig7.39, Ncra_OR74A_chrIII_contig7.40, Ncra_OR74A_chrV_contig7.41, Ncra_OR74A_chrIII_contig7.42, Ncra_OR74A_chrIV_contig7.43, Ncra_OR74A_chrII_contig7.44, Ncra_OR74A_chrIII_contig7.45, Ncra_OR74A_chrV_contig7.46, Ncra_OR74A_chrIV_contig7.47, Ncra_OR74A_chrV_contig7.48, Ncra_OR74A_chrIV_contig7.49, Ncra_OR74A_contig7.50, Ncra_OR74A_chrIV_contig7.51, Ncra_OR74A_chrVII_contig7.52, Ncra_OR74A_chrIV_contig7.53, Ncra_OR74A_chrII_contig7.54, Ncra_OR74A_chrVII_contig7.55, Ncra_OR74A_chrI_contig7.56, Ncra_OR74A_chrII_contig7.57, Ncra_OR74A_chrI_contig7.58, Ncra_OR74A_chrI_contig7.59, Ncra_OR74A_chrIV_contig7.60, Ncra_OR74A_contig7.61, Ncra_OR74A_chrI_contig7.62, Ncra_OR74A_chrV_contig7.63, Ncra_OR74A_chrV_contig7.64, Ncra_OR74A_chrI_contig7.65, Ncra_OR74A_chrVII_contig7.66, Ncra_OR74A_chrIII_contig7.67, Ncra_OR74A_chrII_contig7.68, Ncra_OR74A_chrIII_contig7.69, Ncra_OR74A_chrVII_contig7.249, Ncra_OR74A_chrI_contig7.70, Ncra_OR74A_chrII_contig7.71, Ncra_OR74A_chrI_contig7.72, Ncra_OR74A_chrVII_contig7.73, Ncra_OR74A_chrIII_contig7.74, Ncra_OR74A_chrVII_contig7.75, Ncra_OR74A_chrVII_contig7.76, Ncra_OR74A_chrII_contig7.77, Ncra_OR74A_chrVII_contig7.78, Ncra_OR74A_chrIV_contig7.79, Ncra_OR74A_chrV_contig7.80, Ncra_OR74A_chrII_contig7.81, Ncra_OR74A_chrI_contig7.82, Ncra_OR74A_chrIV_contig7.83, Ncra_OR74A_chrVII_contig7.84, Ncra_OR74A_chrVI_contig7.85, Ncra_OR74A_chrI_contig7.86, Ncra_OR74A_chrII_contig7.87, Ncra_OR74A_chrV_contig7.88, Ncra_OR74A_chrI_contig7.89, Ncra_OR74A_contig7.90, Ncra_OR74A_chrV_contig7.91, Ncra_OR74A_chrI_contig7.92, Ncra_OR74A_contig7.93, Ncra_OR74A_chrII_contig7.94, Ncra_OR74A_chrIII_contig7.95, Ncra_OR74A_contig7.96, Ncra_OR74A_chrV_contig7.97, Ncra_OR74A_contig7.98, Ncra_OR74A_chrI_contig7.99, Ncra_OR74A_contig7.100, Ncra_OR74A_contig7.101, Ncra_OR74A_chrVI_contig7.170, Ncra_OR74A_contig7.102, Ncra_OR74A_chrVI_contig7.103, Ncra_OR74A_contig7.248, Ncra_OR74A_contig7.104, Ncra_OR74A_contig7.105, Ncra_OR74A_contig7.106, Ncra_OR74A_contig7.107, Ncra_OR74A_contig7.108, Ncra_OR74A_contig7.193, Ncra_OR74A_contig7.215, Ncra_OR74A_contig7.109, Ncra_OR74A_contig7.110, Ncra_OR74A_contig7.111, Ncra_OR74A_contig7.112, Ncra_OR74A_contig7.155, Ncra_OR74A_contig7.209, Ncra_OR74A_contig7.113, Ncra_OR74A_contig7.205, Ncra_OR74A_contig7.251, Ncra_OR74A_contig7.114, Ncra_OR74A_contig7.115, Ncra_OR74A_chrII_contig7.250, Ncra_OR74A_chrV_contig7.116, Ncra_OR74A_contig7.117, Ncra_OR74A_chrVII_contig7.118, Ncra_OR74A_contig7.119, Ncra_OR74A_chrI_contig7.231, Ncra_OR74A_contig7.120, Ncra_OR74A_contig7.242, Ncra_OR74A_contig7.121, Ncra_OR74A_contig7.142, Ncra_OR74A_contig7.184, Ncra_OR74A_contig7.144, Ncra_OR74A_contig7.122, Ncra_OR74A_contig7.154, Ncra_OR74A_contig7.161, Ncra_OR74A_contig7.210, Ncra_OR74A_contig7.123, Ncra_OR74A_contig7.124, 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Annotate Restriction Sites Download Decorated FASTA File Download Sequence File Download Track Data Download generic

Data Source Amoeboaphelidium Ascosphaera apis Aspergillus fumigatus (Af293 FungiDB-39) Aspergillus niger (CBS 513-88) Candida albicans LOH (SC5314 haploid) Candida lusitiniae (ATCC 42720) Coprinopsis cinerea Coprinopsis cinerea (MAKER updated v3) Escovopsis weberi (v1) Fusarium euwallaceae Hortaea werneckii (v2) JEL142 (v 0.01) Leucoagricus sp (Strain 1) Monosporascus Neolecta irregularis (Illumina) Neurospora crassa OR74A v10 Neurospora crassa OR74A v12 Neurospora crassa OR74A v7 Neurospora test Population Display Demo Private N.crassa v10 Pyronema confluens (454+Illumina) Renderfarm demo (gbrowse_slave must be running!) Rhizopus stolonifer B9770 Rhizopus stolonifer B9770 IGS Rozella allomycis (Illumina+PacBio) Sordaria macrospora strain k-hell (2010 genome paper version) Test -- Neurospora crassa OR74A v10 Tutorial database Yeast chromosomes 1+2 (advanced) Yeast chromosomes 1+2 (basic)

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 Overview

 Overview

 

 Region

 Region

 

  GC Content  

 Details

 Details

 

  NCBI genes (Broad annotation)  

  PASA (pasanames) updated NCBI/Broad genes  

  Named Genes (Radford laboratory)  

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 Tracks

 Tracks

 

 ChIP-Seq

 ChIP-Seq

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K4dime Coverage (maq) [?]

K9me3 Coverage (maq) [?]

meDIP Coverage (maq) [?]

 Conservation

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Conservation with N. tetrasperma and N. discreta

 Gene

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All Neurospora ESTs Assembly PASA (2009-01-02 update) cDNA	Named Genes (Radford laboratory) [?]	SNAP
All Neurospora ESTs PASA (2009-01-02 update) cDNA	NCBI genes (Broad annotation) [?]	SNAP EST trained
All Neurospora ESTs PASA cDNA	PASA (pasanames) updated NCBI/Broad genes	tRNAs
miRNAPred [?]	PASA updated NCBI/Broad genes
N.crassa PASA cDNA	rDNA

 General

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3-frame translation (forward)	6-frame translation	Knock-Out Project Primers
3-frame translation (reverse)	DNA/GC Content	RIP CRI (features)

 Genomic-Reseq

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wavy (bwa) [?]

wavy (maq) [?]

 RNA-Seq

 RNA-Seq

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CE.RI.1A (bowtie)	CE.RI.3A (bowtie)	Strain 1693 (bowtie)
CE.RI.2A (bowtie)	CE.RI.4A (bowtie)

 SmallRNA Solexa

 SmallRNA Solexa

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small RNA (Borkovich) [?]	SmallRNA Pooled (SOAPv1 unique)	SmallRNA Pooled coverage (SOAPv1 unique)
SmallRNA Pooled (SOAPv1 multi)	SmallRNA Pooled coverage (SOAPv1 multi)

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sRNA Borkovich

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Conservation

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GC Content

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Restriction Sites

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